CV
- DIPLOMES:
2012 : Habilitation à diriger des recherches (HDR), Université Paris Est.
1998 : Doctorat de Microbiologie, Université Paul Sabatier (Toulouse).
PARCOURS PROFESSIONNEL :
Depuis 2017 : Ingénieur de Recherche – IRSD
Thème: epidemiologie moléculaire des E. coli
2002-2017 : Ingénieur de Recherche – ANSES, Laboratoire de Sécurité des Aliments (Maisons-Alfort)
Thème : détection et caractérisation des bactéries pathogènes dans les aliments (EHEC, S. aureus, L. monocytogenes)
1999-2001 : Université de Cambridge, Département de Pathologie (Royaume uni). Thème : sécrétion de type III et assemblage des flagelles chez Salmonella typhimurium (bourse EMBO)
1998-1999 : Attaché temporaire d’enseignement et de recherche (ATER), Université Paul Sabatier (Toulouse).
1995-1998 : Doctorant, CNRS - Labopratoire de Microbiologie et Génétique Moléculaire (Toulouse). Thème : bactéries lactiques et bactériophages
Recherche/projet research/project
PREVALENCE AND PERSISTENCE OF PATHOGENIC AND ANTIBIOTIC RESISTANT BACTERIA
PRÉVALENCE ET PERSISTANCE DES BACTÉRIES PATHOGÈNES ET RÉSISTANTES AUX ANTIBIOTIQUES
PRÉVALENCE ET PERSISTANCE DES BACTÉRIES PATHOGÈNES ET RÉSISTANTES AUX ANTIBIOTIQUES
Production scientifique scientific production
Auvray F, Perrat A, Arimizu Y, Chagneau C, Bossuet-Greif N, Massip C, Brugère H, Nougayrède JP, Hayashi T, Branchu P, Ogura Y, Oswald E. Insights into the acquisition of the pks island and production of colibactin in the Escherichia coli population. Microb Genom. 2021 7:000579. doi: 10.1099/mgen.0.000579
Arimizu Y, Kirino Y, Sato MP, Uno K, Sato T, Gotoh Y, Auvray F, Brugere H, Oswald E, Mainil JG, Anklam KS, Döpfer D, Yoshino S, Ooka T, Tanizawa Y, Nakamura Y, Iguchi A, Morita-Ishihara T, Ohnishi M, Akashi K, Hayashi T, Ogura Y. Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains. Genome Res. 2019 29:1495-1505. doi: 10.1101/gr.249268.119.
Bonanno L, Petit MA, Loukiadis E, Michel V, Auvray F. Heterogeneity in induction level, infection ability, and morphology of shiga toxin-encoding phages (Stx phages) from dairy and human shiga toxin-producing Escherichia coli O26:H11 isolates. Appl Environ Microbiol. 2016; 82(7):2177-86.
Bonanno L, Loukiadis E, Mariani-Kurkdjian P, Oswald E, Garnier L, Michel V, Auvray F. Diversity of shiga toxin-producing Escherichia coli (STEC) O26:H11 strains examined via stx subtypes and insertion sites of Stx and EspK bacteriophages. Appl Environ Microbiol. 2015; 81(11):3712-21.
Bibbal D, Loukiadis E, Kérourédan M, Ferré F, Dilasser F, Peytavin de Garam C, Cartier P, Oswald E, Gay E, Auvray F, Brugère H. Prevalence of carriage of Shiga toxin-producing Escherichia coli serotypes O157:H7, O26:H11, O103:H2, O111:H8, and O145:H28 among slaughtered adult cattle in France. Appl Environ Microbiol. 2015 ; 81(4):1397-1405.
Valat C, Forest K, Auvray F, Métayer V, Méheut T, Polizzi C, Gay E, Haenni M, Oswald E, Madec JY. Assessment of adhesins as an indicator of pathovar-associated virulence factors in bovine Escherichia coli. Appl Environ Microbiol. 2014 ; 80(23):7230-4.
Bihannic M, Ghanbarpour R, Auvray F, Cavalié L, Châtre P, Boury M, Brugère H, Madec JY, Oswald E. Identification and detection of three new F17 fimbrial variants in Escherichia coli strains isolated from cattle. Vet Res. 2014 ; 45:76.
Bibbal D, Loukiadis E, Kérourédan M, Peytavin de Garam C, Ferré F, Cartier P, Gay E, Oswald E, Auvray F, Brugère H. Intimin gene (eae) subtype-based real-time PCR strategy for specific detection of Shiga toxin-producing Escherichia coli serotypes O157:H7, O26:H11, O103:H2, O111:H8, and O145:H28 in cattle feces. Appl Environ Microbiol. 2014 ; 80(3):1177-84.
Farrokh C, Jordan K, Auvray F, Glass K, Oppegaard H, Raynaud S, Thevenot D, Condron R, De Reu K, Govaris A, Heggum K, Heyndrickx M, Hummerjohann J, Lindsay D, Miszczycha S, Moussiegt S, Verstraete K, Cerf O. Review of Shiga-toxin-producing Escherichia coli (STEC) and their significance in dairy production. Int J Food Microbiol. 2013 ;162(2):190-212.
Phylogenetic grouping and virulence potential of extended-spectrum-β-lactamase-producing Escherichia coli strains in cattle. Valat C, Auvray F, Forest K, Métayer V, Gay E, Peytavin de Garam C, Madec JY, Haenni M. Appl Environ Microbiol. 2012 ; 78(13):4677-82.
Auvray F, Dilasser F, Bibbal D, Kérourédan M, Oswald E, Brugère H. French cattle is not a reservoir of the highly virulent enteroaggregative Shiga toxin-producing Escherichia coli of serotype O104:H4. Vet Microbiol. 2012 ; 158(3-4):443-5.
Valat C, Haenni M, Saras E, Auvray F, Forest K, Oswald E, Madec JY. CTX-M-15 extended-spectrum β-lactamase in a shiga toxin-producing Escherichia coli isolate of serotype O111:H8. Appl Environ Microbiol. 2012 ; 78(4):1308-9.
Derzelle S, Grine A, Madic J, de Garam CP, Vingadassalon N, Dilasser F, Jamet E, Auvray F. A quantitative PCR assay for the detection and quantification of Shiga toxin-producing Escherichia coli (STEC) in minced beef and dairy products. Int J Food Microbiol. 2011 ; 151(1):44-51.
Madic J, Vingadassalon N, de Garam CP, Marault M, Scheutz F, Brugère H, Jamet E, Auvray F. Detection of Shiga toxin-producing Escherichia coli serotypes O26:H11, O103:H2, O111:H8, O145:H28, and O157:H7 in raw-milk cheeses by using multiplex real-time PCR. Appl Environ Microbiol. 2011 ; 77(6):2035-41.
Arimizu Y, Kirino Y, Sato MP, Uno K, Sato T, Gotoh Y, Auvray F, Brugere H, Oswald E, Mainil JG, Anklam KS, Döpfer D, Yoshino S, Ooka T, Tanizawa Y, Nakamura Y, Iguchi A, Morita-Ishihara T, Ohnishi M, Akashi K, Hayashi T, Ogura Y. Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains. Genome Res. 2019 29:1495-1505. doi: 10.1101/gr.249268.119.
Bonanno L, Petit MA, Loukiadis E, Michel V, Auvray F. Heterogeneity in induction level, infection ability, and morphology of shiga toxin-encoding phages (Stx phages) from dairy and human shiga toxin-producing Escherichia coli O26:H11 isolates. Appl Environ Microbiol. 2016; 82(7):2177-86.
Bonanno L, Loukiadis E, Mariani-Kurkdjian P, Oswald E, Garnier L, Michel V, Auvray F. Diversity of shiga toxin-producing Escherichia coli (STEC) O26:H11 strains examined via stx subtypes and insertion sites of Stx and EspK bacteriophages. Appl Environ Microbiol. 2015; 81(11):3712-21.
Bibbal D, Loukiadis E, Kérourédan M, Ferré F, Dilasser F, Peytavin de Garam C, Cartier P, Oswald E, Gay E, Auvray F, Brugère H. Prevalence of carriage of Shiga toxin-producing Escherichia coli serotypes O157:H7, O26:H11, O103:H2, O111:H8, and O145:H28 among slaughtered adult cattle in France. Appl Environ Microbiol. 2015 ; 81(4):1397-1405.
Valat C, Forest K, Auvray F, Métayer V, Méheut T, Polizzi C, Gay E, Haenni M, Oswald E, Madec JY. Assessment of adhesins as an indicator of pathovar-associated virulence factors in bovine Escherichia coli. Appl Environ Microbiol. 2014 ; 80(23):7230-4.
Bihannic M, Ghanbarpour R, Auvray F, Cavalié L, Châtre P, Boury M, Brugère H, Madec JY, Oswald E. Identification and detection of three new F17 fimbrial variants in Escherichia coli strains isolated from cattle. Vet Res. 2014 ; 45:76.
Bibbal D, Loukiadis E, Kérourédan M, Peytavin de Garam C, Ferré F, Cartier P, Gay E, Oswald E, Auvray F, Brugère H. Intimin gene (eae) subtype-based real-time PCR strategy for specific detection of Shiga toxin-producing Escherichia coli serotypes O157:H7, O26:H11, O103:H2, O111:H8, and O145:H28 in cattle feces. Appl Environ Microbiol. 2014 ; 80(3):1177-84.
Farrokh C, Jordan K, Auvray F, Glass K, Oppegaard H, Raynaud S, Thevenot D, Condron R, De Reu K, Govaris A, Heggum K, Heyndrickx M, Hummerjohann J, Lindsay D, Miszczycha S, Moussiegt S, Verstraete K, Cerf O. Review of Shiga-toxin-producing Escherichia coli (STEC) and their significance in dairy production. Int J Food Microbiol. 2013 ;162(2):190-212.
Phylogenetic grouping and virulence potential of extended-spectrum-β-lactamase-producing Escherichia coli strains in cattle. Valat C, Auvray F, Forest K, Métayer V, Gay E, Peytavin de Garam C, Madec JY, Haenni M. Appl Environ Microbiol. 2012 ; 78(13):4677-82.
Auvray F, Dilasser F, Bibbal D, Kérourédan M, Oswald E, Brugère H. French cattle is not a reservoir of the highly virulent enteroaggregative Shiga toxin-producing Escherichia coli of serotype O104:H4. Vet Microbiol. 2012 ; 158(3-4):443-5.
Valat C, Haenni M, Saras E, Auvray F, Forest K, Oswald E, Madec JY. CTX-M-15 extended-spectrum β-lactamase in a shiga toxin-producing Escherichia coli isolate of serotype O111:H8. Appl Environ Microbiol. 2012 ; 78(4):1308-9.
Derzelle S, Grine A, Madic J, de Garam CP, Vingadassalon N, Dilasser F, Jamet E, Auvray F. A quantitative PCR assay for the detection and quantification of Shiga toxin-producing Escherichia coli (STEC) in minced beef and dairy products. Int J Food Microbiol. 2011 ; 151(1):44-51.
Madic J, Vingadassalon N, de Garam CP, Marault M, Scheutz F, Brugère H, Jamet E, Auvray F. Detection of Shiga toxin-producing Escherichia coli serotypes O26:H11, O103:H2, O111:H8, O145:H28, and O157:H7 in raw-milk cheeses by using multiplex real-time PCR. Appl Environ Microbiol. 2011 ; 77(6):2035-41.